Body
Applications
For the most up-to-date listing, see here
Several programs with different versions are available on HPC systems. Having all the versions at the disposal of the user simultaneously leads to library conflicts and clashes. In any production environment only the needed packages should be included in the environment of the user. In-order to use python3 the appropriate module should be loaded.
$ module load python/3
Modules are “configuration” set/change/remove environment variables from the current environment.
Useful module commands
module avail: display the available packages that can be loadedmodule list: lists the loaded packagesmodule load foo: to load the package foomodule rm foo: to unload the package foomodule purge: to unload all the loaded packages
For detailed information on the usage of module check the man pages
$ man module
Installed applications, tools and scientific libraries
Below is a list of applications currently installed and maintained on the HPC environment. These application are available to all users and can be used in any combination as long as they are compatible with each other and do not cause library clashes.
Scientific applications
| Application |
Version |
| ansys |
electromagnetics/19.0 |
| fluent/17.2 |
| fluent/18.2 |
| fluent/19.0 |
| darknet |
0ff2343 |
| petrel |
2019.2 |
| enzo |
enzo |
| 2.5-gcc-9.1.0-openmpi-4.0.1 |
| ffmpeg |
4.2.2 |
| gaussian |
09 |
| git |
2.23.0 |
| gnuplot |
5.2.8 |
| gromacs |
2020-gpu |
| 2020-mpi-gpu |
| 2020-mpi |
| kaldi |
4c41168-gcc-8.3.0-cuda-10.1 |
| 4c41168-gcc-8.3.0 |
| lammps |
7Aug2019-gcc-9.1.0 |
| mathematica |
11.3 |
| matlab |
2018b |
| 2019b |
| mrbayes |
3.2.7-gcc-9.1.0 |
| 3.2.7-mpi |
| 3.2.7-openmpi-4.0.1 |
| 3.2.7 |
| mumax |
3.10beta-b21e9e6 |
| 3.10beta |
| nload |
0.7.4 |
| octave |
5.2.0 |
| pari |
2.11.2-mt |
| 2.11.2 |
| semargl |
221910c |
| singularity |
3.1.0 |
| 3.5.2 |
| sox |
12.18.1 |
| 14.4.2 |
| vim |
8.1 |
Scientific Libraries
| Name |
Version |
| amd |
amd-rng/2.1 |
| blis/2.1 |
| fftw/3.5.8-amd-mpi |
| lapack/2.1 |
| libm/3.5.0 |
| scalapack/2.1 |
| securerng/2.1 |
| blas |
3.8.0 |
| cblas |
3.8.0 |
| cupy |
py36-cuda-8.0 |
| py36-cuda-10.1 |
| py37-cuda-8.0 |
| py37-cuda-9.1 |
| py37-cuda-10.1 |
| eigen |
3.3.7 |
| fftw |
2.1.5 |
| 3.3.8 |
| flac |
1.3.3 |
| gdal |
2.4.1 |
| gperftools |
2.7-gcc-4.8.5 |
| grackle |
3.2-gcc-9.1.0-haswell |
| gsl |
2.6 |
| hdf/5 |
1.8.15-mpi |
| 1.8.15-openmpi-4.0.1 |
| 1.8.15-serial-gcc-9.1.0 |
| 1.8.15-serial |
| hypre |
openmpi/2.13.10-gcc-9.1.0 |
| lame |
3.100 |
| lapack |
3.8.0 |
| libcint |
3.0.18 |
| libjpeg |
turbo-2.0.4 |
| libpng |
1.6.36 |
| libunwind |
1.3.1-gcc-4.8.5 |
| 1.3.1-gcc-9.1.0 |
| numactl |
2.0.13 |
| openblas |
0.3.5 |
| 0.3.8-gcc-9.1.0-dynamic-arch |
| 0.3.8-gcc-9.1.0-haswell |
| opencv |
3.4.10 |
| openfst |
1.6.7-gcc-8.3.0 |
| rpy2 |
2.9.5-py3-gcc-8.3.0 |
| 2.9.5 |
| ucx |
1.6.0 |
| xlrd |
1.2.0 |
Compilers and interpreters
| Name |
Version |
| amd/aocc |
2.0.0 |
| 2.1.0 |
| cmake |
3.10.2 |
| 3.13.4 |
| 3.15.4 |
| Cuda |
8.0 |
| 9.0 |
| 9.1 |
| 10 |
| 10.1 |
| gcc |
5.4.0 |
| 6.4.0 |
| 7.2.0 |
| 8.3.0 |
| 9.1.0 |
| 10.1.0 |
| go |
1.11 |
| 1.13.4 |
| intel |
2019u5 |
| java |
java8 |
| jdk/1.8.0_161 |
| jdk/1.8.0 |
| llvm |
5 |
| 8 |
| 9 |
| mpi/mpich |
intel-2019u5 |
| 3.3 |
| 3.3.2 |
| mpi/mvapich |
2.3 |
| mpi/openmpi |
1.6.2 |
| 3.1.3 |
| 4.0.1-slurm-18.08.6 |
| 4.0.1 |
| perl |
5.28.0 |
| 5.30.1 |
| pgi |
19.10/pgi |
| python |
2 |
| 2.7.15 |
| 3 |
| 3.7.3 |
| 3.7.7 |
| 3.8.2 |
| base/miniconda3 |
| pytorch |
| pytorch-0.4.1 |
| qiskit |
| tensorflow-1.14.0 |
| tensorflow-2.1 |
| theano |
| theano-1.0.4 |
| scala |
2.12.7 |
| swig |
4.0.1 |
Miscellaneous Applications
| Name |
Version |
| R |
3.6.1 |
| autoconf |
2.69 |
| automake |
1.16 |
| curl |
7.58.0 |
| hwloc |
2.0.3 |
| libtool |
2.4.6 |
| pmix |
2.2.2 |
| prun |
1.3 |